7NZ4

Cryo-EM structure of the MukBEF dimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites.

Burmann, F.Funke, L.F.H.Chin, J.W.Lowe, J.

(2021) Mol Cell 81: 4891-4906.e8

  • DOI: https://doi.org/10.1016/j.molcel.2021.10.011
  • Primary Citation of Related Structures:  
    7NYW, 7NYX, 7NYY, 7NYZ, 7NZ0, 7NZ2, 7NZ3, 7NZ4

  • PubMed Abstract: 

    The ring-like structural maintenance of chromosomes (SMC) complex MukBEF folds the genome of Escherichia coli and related bacteria into large loops, presumably by active DNA loop extrusion. MukBEF activity within the replication terminus macrodomain is suppressed by the sequence-specific unloader MatP. Here, we present the complete atomic structure of MukBEF in complex with MatP and DNA as determined by electron cryomicroscopy (cryo-EM). The complex binds two distinct DNA double helices corresponding to the arms of a plectonemic loop. MatP-bound DNA threads through the MukBEF ring, while the second DNA is clamped by the kleisin MukF, MukE, and the MukB ATPase heads. Combinatorial cysteine cross-linking confirms this topology of DNA loop entrapment in vivo. Our findings illuminate how a class of near-ubiquitous DNA organizers with important roles in genome maintenance interacts with the bacterial chromosome.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Structural Studies Division, Cambridge Biomedical Campus, Cambridge, UK. Electronic address: fburmann@mrc-lmb.cam.ac.uk.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome partition protein MukBA [auth A1],
B [auth A2],
C [auth B1],
D [auth B2]
1,482Photorhabdus thracensisMutation(s): 1 
Gene Names: mukBVY86_15870
UniProt
Find proteins for A0A0F7LRY2 (Photorhabdus thracensis)
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Go to UniProtKB:  A0A0F7LRY2
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UniProt GroupA0A0F7LRY2
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome partition protein MukFE [auth C1],
F [auth D1]
440Photorhabdus thracensisMutation(s): 0 
Gene Names: mukFVY86_15860
UniProt
Find proteins for A0A0F7LMQ4 (Photorhabdus thracensis)
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Go to UniProtKB:  A0A0F7LMQ4
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UniProt GroupA0A0F7LMQ4
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome partition protein MukEG [auth E1],
H [auth E2],
I [auth F1],
J [auth F2]
240Photorhabdus thracensisMutation(s): 0 
Gene Names: mukEVY86_15865
UniProt
Find proteins for A0A0F7LPV6 (Photorhabdus thracensis)
Explore A0A0F7LPV6 
Go to UniProtKB:  A0A0F7LPV6
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UniProt GroupA0A0F7LPV6
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinK [auth G1],
L [auth G2],
M [auth H1],
N [auth H2]
78Escherichia coli BL21(DE3)Mutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-07
    Type: Initial release
  • Version 1.1: 2022-03-23
    Changes: Database references, Source and taxonomy, Structure summary