UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5NDF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5NDF_UDP_A_602 | 97% | 35% | 0.071 | 0.984 | 1.07 | 1.58 | 1 | 7 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_E_602 | 95% | 32% | 0.073 | 0.979 | 1.35 | 1.47 | 6 | 5 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_B_602 | 89% | 37% | 0.094 | 0.972 | 1.06 | 1.48 | 1 | 7 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_C_602 | 86% | 27% | 0.096 | 0.965 | 1.14 | 1.96 | 2 | 8 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_D_602 | 81% | 27% | 0.104 | 0.958 | 1.28 | 1.8 | 3 | 8 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_F_602 | 63% | 26% | 0.138 | 0.934 | 1.25 | 1.89 | 4 | 9 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 20% | 0.046 | 0.991 | 2.39 | 1.19 | 4 | 3 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
