Ligand validation:5KAF

SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

SQD is a Ligand Of Interest in 5KAF designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5KAF_SQD_B_626	21%	36%	0.236	0.845	0.95	1.65	4	12	0	0	100%	1
5KAF_SQD_f_101	18%	34%	0.248	0.87	1.07	1.65	5	11	0	0	80%	0.7963
5KAF_SQD_A_603	14%	37%	0.296	0.857	0.97	1.59	5	11	0	0	96%	0.963
5KAF_SQD_b_601	12%	40%	0.282	0.808	0.96	1.45	5	9	0	0	100%	1
5KAF_SQD_c_501	10%	39%	0.324	0.836	0.95	1.51	5	9	0	0	100%	1
5KAF_SQD_D_408	10%	32%	0.27	0.798	1	1.78	4	11	0	0	87%	0.8704
5KAF_SQD_A_619	7%	47%	0.279	0.79	0.88	1.17	2	2	0	0	74%	0.7407
5KAF_SQD_D_409	7%	34%	0.294	0.79	1.07	1.62	5	11	0	0	80%	0.7963
5KAF_SQD_I_101	2%	47%	0.39	0.702	0.86	1.19	2	2	0	0	74%	0.7407
5V2C_SQD_a_413	94%	24%	0.075	0.976	1.12	2.14	4	12	0	0	100%	1
6DHE_SQD_A_412	77%	23%	0.113	0.961	1.05	2.27	5	14	0	0	96%	0.963
8IRC_SQD_a_411	77%	32%	0.119	0.96	0.96	1.83	3	13	0	0	100%	1
8IR5_SQD_a_411	75%	33%	0.123	0.958	0.95	1.77	3	13	0	0	100%	1
8IRF_SQD_a_410	75%	32%	0.125	0.96	0.96	1.83	3	13	0	0	100%	0.49
8IR8_SQD_a_409	75%	33%	0.126	0.96	0.95	1.77	3	13	0	0	100%	0.4

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.