SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
SQD is a Ligand Of Interest in 5GTH designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5GTH_SQD_A_410 | 59% | 31% | 0.154 | 0.938 | 0.97 | 1.86 | 3 | 12 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_a_410 | 51% | 34% | 0.179 | 0.933 | 0.96 | 1.73 | 3 | 12 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_A_412 | 32% | 45% | 0.21 | 0.885 | 1.04 | 1.1 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_a_412 | 31% | 42% | 0.215 | 0.884 | 1.06 | 1.24 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_B_620 | 29% | 37% | 0.207 | 0.864 | 1.07 | 1.48 | 4 | 10 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_D_413 | 21% | 30% | 0.269 | 0.914 | 1.15 | 1.78 | 3 | 12 | 0 | 0 | 80% | 0.7963 |
| 5GTH_SQD_L_101 | 10% | 37% | 0.27 | 0.772 | 1.02 | 1.53 | 3 | 9 | 0 | 0 | 100% | 1 |
| 5GTH_SQD_f_101 | 4% | 37% | 0.356 | 0.768 | 1.19 | 1.38 | 3 | 7 | 0 | 0 | 80% | 0.7963 |
| 5V2C_SQD_a_413 | 94% | 24% | 0.075 | 0.976 | 1.12 | 2.14 | 4 | 12 | 0 | 0 | 100% | 1 |
| 6DHE_SQD_A_412 | 77% | 23% | 0.113 | 0.961 | 1.05 | 2.27 | 5 | 14 | 0 | 0 | 96% | 0.963 |
| 8IRC_SQD_a_411 | 77% | 32% | 0.119 | 0.96 | 0.96 | 1.83 | 3 | 13 | 0 | 0 | 100% | 1 |
| 8IR5_SQD_a_411 | 75% | 33% | 0.123 | 0.958 | 0.95 | 1.77 | 3 | 13 | 0 | 0 | 100% | 1 |
| 8IRF_SQD_a_410 | 75% | 32% | 0.125 | 0.96 | 0.96 | 1.83 | 3 | 13 | 0 | 0 | 100% | 0.49 |
| 8IR8_SQD_a_409 | 75% | 33% | 0.126 | 0.96 | 0.95 | 1.77 | 3 | 13 | 0 | 0 | 100% | 0.4 |
