5VNT

Solution NMR Structure of the C-terminal Headpiece Domain of Villin 4 from A.thaliana, the First Non-Vertebrate Headpiece Structure


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
115N-HSQC1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 500
213C-HSQC1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 600
33D HNCACB1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
43D CBCA(CO)NH1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
53D HNCO1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
63D HN(CA)CO1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
73D 1H-15N NOESY1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
83D 1H-13C NOESY aliphatic1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
93D 1H-13C NOESY aromatic1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
103D C(CO)NH1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
113D HCC(CO)NH1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
123D HBHA(CO)NH1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 850
132D HBCBCGCDHD1.0 mM atVHP, 20.0 mM PIPES, 50 mM sodium chloride, 0.01 % sodium azide90% H2O/10% D2O50 mM6.81 atm298Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
2BrukerAVANCE III600
3BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
molecular dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe8.9Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionTopSpin3.1Bruker Biospin
3peak pickingNMRView9.0Johnson, One Moon Scientific
4structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich
5refinementCYANAGuntert, Mumenthaler and Wuthrich