3T5N

1.8A crystal structure of Lassa virus nucleoprotein in complex with ssRNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72950.1M Hepes, pH 7.0, 18% PEG 3350, 12.5mM MgCl 2 and 7.5mM NiCl2, VAPOR DIFFUSION, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.8433.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.159α = 90
b = 71.737β = 90
c = 56.887γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-09-17MMAD
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.20.9795, 1.0ALS5.0.2
2ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7873710039465

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONSAD1.787371.922932629326149199.680.18370.18370.18230.21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.1548-0.8956-2.2591
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d13.728
f_angle_d0.998
f_chiral_restr0.064
f_bond_d0.007
f_plane_restr0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2179
Nucleic Acid Atoms122
Solvent Atoms184
Heterogen Atoms2

Software

Software
Software NamePurpose
BOSdata collection
Auto-Rickshawphasing
PHENIXrefinement
d*TREKdata reduction
d*TREKdata scaling