3T5N
1.8A crystal structure of Lassa virus nucleoprotein in complex with ssRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Arenavirus nucleoprotein N-terminal domain-like | 8053519 | 3002201 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00843 | e3t5nA1 | A: alpha complex topology | X: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | H: N-terminal domain in Lassa fever virus nucleoprotein (From Topology) | T: N-terminal domain in Lassa fever virus nucleoprotein | F: PF00843 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00843 | Arenavirus nucleocapsid N-terminal domain (Arena_nucleocap) | Arenavirus nucleocapsid N-terminal domain | This N-terminal domain folds into a novel structure with a deep cavity for binding the m7GpppN cap structure that is required for viral RNA transcription [2]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038115 | Nucleocapsid, C-terminal superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR000229 | Nucleocapsid protein, arenaviridae | Family | |
IPR035083 | Nucleocapsid, N-terminal, Arenaviridae | Domain | |
IPR035084 | Nucleocapsid, C-terminal, Arenaviridae | Domain |