X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72980.5% Jeffamine 2001, 1.1M Sodium Malonate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2655.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.366α = 90
b = 32.66β = 110.68
c = 92.803γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-10-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.729.7899.80.0780.08353.680488029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.899.40.51290.5451.933.5823

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.729.788029763939099.860.226810.223610.29131RANDOM24.951
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.670.240.26-5.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.494
r_dihedral_angle_3_deg17.449
r_dihedral_angle_4_deg13.653
r_dihedral_angle_1_deg5.884
r_scangle_it1.664
r_angle_refined_deg1.25
r_scbond_it1.004
r_angle_other_deg0.88
r_mcangle_it0.503
r_mcbond_it0.334
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.494
r_dihedral_angle_3_deg17.449
r_dihedral_angle_4_deg13.653
r_dihedral_angle_1_deg5.884
r_scangle_it1.664
r_angle_refined_deg1.25
r_scbond_it1.004
r_angle_other_deg0.88
r_mcangle_it0.503
r_mcbond_it0.334
r_symmetry_hbond_refined0.293
r_nbd_refined0.214
r_nbd_other0.192
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.155
r_symmetry_vdw_other0.151
r_mcbond_other0.117
r_symmetry_vdw_refined0.111
r_nbtor_other0.085
r_chiral_restr0.073
r_bond_refined_d0.011
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1613
Nucleic Acid Atoms
Solvent Atoms25
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing