2KXN

NMR structure of human Tra2beta1 RRM in complex with AAGAAC RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
22D 1H-13C HSQC0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
32D 1H-1H NOESY0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
43D CBCA(CO)NH0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
53D HNCA0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
62D 1H-1H TOCSY0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
73D HCCH-TOCSY0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
83D 1H-15N NOESY0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
93D 1H-13C NOESY0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
103D HNCACB0.8 mM [U-15N] Tra2beta1-1, 0.8 mM [U-13C; U-15N] Tra2beta1-2, 0.8 mM RNA (5'-R(*AP*AP*GP*AP*AP*C)-3')-390% H2O/10% D2O1205.5ambient313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE600
3BrukerAVANCE700
4BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number12
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmber8Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
2structure solutionCYANA2.0Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentSparky3.113Goddard