Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTransmembrane di-heme cytochromes8094397 3000517 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyTransmembrane di-heme cytochromes8094397 3000517 SCOP2B (2022-06-29)
BSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8093928 3000966 SCOP2B (2022-06-29)
JSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8093928 3000966 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyISP domain8041548 3000233 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyISP domain8041548 3000233 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyPetN subunit of the cytochrome b6f complex8094653 3000279 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPetN subunit of the cytochrome b6f complex8094653 3000279 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00033e7qrmA1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
IPF00033e7qrmI1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
BPF00032e7qrmB1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
JPF00032e7qrmJ1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
LF_UNCLASSIFIEDe7qrmL2 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: F_UNCLASSIFIEDECOD (1.6)
LPF00355e7qrmL1 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: PF00355ECOD (1.6)
LF_UNCLASSIFIEDe7qrmL3 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe7qrmD2 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: F_UNCLASSIFIEDECOD (1.6)
DPF00355e7qrmD1 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: PF00355ECOD (1.6)
DF_UNCLASSIFIEDe7qrmD3 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
MPF05115e7qrmM1 A: extended segmentsX: PetL subunit of the cytochrome b6f complex (From Topology)H: PetL subunit of the cytochrome b6f complex (From Topology)T: PetL subunit of the cytochrome b6f complexF: PF05115ECOD (1.6)
EPF05115e7qrmE1 A: extended segmentsX: PetL subunit of the cytochrome b6f complex (From Topology)H: PetL subunit of the cytochrome b6f complex (From Topology)T: PetL subunit of the cytochrome b6f complexF: PF05115ECOD (1.6)
NPF08041e7qrmN1 A: extended segmentsX: PetM subunit of the cytochrome b6f complex (From Topology)H: PetM subunit of the cytochrome b6f complex (From Topology)T: PetM subunit of the cytochrome b6f complexF: PF08041ECOD (1.6)
FPF08041e7qrmF1 A: extended segmentsX: PetM subunit of the cytochrome b6f complex (From Topology)H: PetM subunit of the cytochrome b6f complex (From Topology)T: PetM subunit of the cytochrome b6f complexF: PF08041ECOD (1.6)
GPF02529e7qrmG1 A: extended segmentsX: PetG subunit of the cytochrome b6f complex (From Topology)H: PetG subunit of the cytochrome b6f complex (From Topology)T: PetG subunit of the cytochrome b6f complexF: PF02529ECOD (1.6)
OPF02529e7qrmO1 A: extended segmentsX: PetG subunit of the cytochrome b6f complex (From Topology)H: PetG subunit of the cytochrome b6f complex (From Topology)T: PetG subunit of the cytochrome b6f complexF: PF02529ECOD (1.6)
PPF03742e7qrmP1 A: extended segmentsX: PetN subunit of the cytochrome b6f complex (From Topology)H: PetN subunit of the cytochrome b6f complex (From Topology)T: PetN subunit of the cytochrome b6f complexF: PF03742ECOD (1.6)
HPF03742e7qrmH1 A: extended segmentsX: PetN subunit of the cytochrome b6f complex (From Topology)H: PetN subunit of the cytochrome b6f complex (From Topology)T: PetN subunit of the cytochrome b6f complexF: PF03742ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, I
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
B, J
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
C, K
PF16639Apocytochrome F, N-terminal (Apocytochr_F_N)Apocytochrome F, N-terminalThis is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain [1].Domain
C, K
PF01333Apocytochrome F, C-terminal (Apocytochr_F_C)Apocytochrome F, C-terminalThis is a sub-family of cytochrome C. See Pfam:PF00034.Domain
D, L
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
E, M
PF05115Cytochrome B6-F complex subunit VI (PetL) (PetL)Cytochrome B6-F complex subunit VI (PetL)- Family
F, N
PF08041PetM family of cytochrome b6f complex subunit 7 (PetM)PetM family of cytochrome b6f complex subunit 7- Family
G, O
PF02529Cytochrome B6-F complex subunit 5 (PetG)Cytochrome B6-F complex subunit 5- Family
H, P
PF03742PetN (PetN)PetN- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, I
Cytochrome b6
B, J
Cytochrome b6-f complex subunit 4
C, K
Cytochrome f
D, L
Cytochrome b6-f complex iron-sulfur subunit, chloroplastic -
E, M
Cytochrome b6-f complex subunit 6
F, N
Cytochrome b6-f complex subunit 7-
G, O
Cytochrome b6-f complex subunit 5
H, P
Cytochrome b6-f complex subunit 8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, I
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
A, I
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
A, I
IPR023530Cytochrome b6, PetBFamily
A, I
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
A, I
IPR005797Cytochrome b/b6, N-terminal domainDomain
B, J
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
B, J
IPR005798Cytochrome b/b6, C-terminalDomain
B, J
IPR005870Cytochrome b6/f complex, subunit IVFamily
B, J
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C, K
IPR002325Cytochrome fFamily
C, K
IPR011054Rudiment single hybrid motifHomologous Superfamily
C, K
IPR036826Cytochrome f large domain superfamilyHomologous Superfamily
C, K
IPR024058Cytochrome f transmembrane anchorHomologous Superfamily
C, K
IPR024094Cytochrome f large domainDomain
D, L
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
D, L
IPR005805Rieske iron-sulphur protein, C-terminalDomain
D, L
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
D, L
IPR023960Cytochrome b6-f complex iron-sulfur subunitFamily
D, L
IPR014349Rieske iron-sulphur proteinFamily
E, M
IPR007802Cytochrome b6-f complex subunit 6Family
F, N
IPR012595PetM of cytochrome b6/f complex subunit 7Family
G, O
IPR003683Cytochrome b6/f complex, subunit 5Family
G, O
IPR036099Cytochrome b6/f complex, subunit 5 superfamilyHomologous Superfamily
H, P
IPR036143Cytochrome b6-f complex, subunit 8 superfamilyHomologous Superfamily
H, P
IPR005497Cytochrome b6-f complex, subunit 8Family

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD