5WTP

Crystal structure of the C-terminal domain of outer membrane protein A (OmpA) from Capnocytophaga gingivalis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5wtpa1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)
A	d5wtpa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)
B	d5wtpb1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)
B	d5wtpb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)
C	d5wtpc1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)
C	d5wtpc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Capnocytophaga gingivalis ATCC 33624 ) [TaxId: 553178 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	OmpA-like	8075223	4001470	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	OmpA-like	8075224	3001650	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	OmpA-like	8075224	3001650	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	OmpA-like	8075224	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00691	e5wtpA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: PF00691	ECOD (1.6)
B	PF00691	e5wtpB1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: PF00691	ECOD (1.6)
C	PF00691	e5wtpC1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: PF00691	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00691	OmpA family (OmpA)	OmpA family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	OmpA family protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	cell adhesion cellular process localization transport monoatomic ion transport establishment of localization	protein-containing complex membrane pore complex membrane protein complex cellular anatomical entity cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR006664	Outer membrane protein, bacterial	Domain
A, B, C	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B, C	IPR003367	Thrombospondin, type 3-like repeat	Repeat
A, B, C	IPR028974	TSP type-3 repeat	Homologous Superfamily
A, B, C	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A, B, C	IPR011250	Outer membrane protein/outer membrane enzyme PagP, beta-barrel	Homologous Superfamily
A, B, C	IPR006665	OmpA-like domain	Domain
A, B, C	IPR027385	Outer membrane protein beta-barrel domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.