Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth I]SCOP2 FamilyRibosomal protein L9 N-domain8070578 4001757 SCOP2 (2022-06-29)
O [auth I]SCOP2 SuperfamilyL9 N-domain-like8070579 3000338 SCOP2 (2022-06-29)
Q [auth O]SCOP2 FamilyRibosomal protein L148072067 4001826 SCOP2 (2022-06-29)
Q [auth O]SCOP2 Superfamily50S Ribosomal protein L14-like8072068 3000433 SCOP2 (2022-06-29)
R [auth P]SCOP2 FamilyRibosomal proteins L15p and L18e8089119 4003555 SCOP2 (2022-06-29)
R [auth P]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8089120 3001045 SCOP2 (2022-06-29)
S [auth Q]SCOP2 FamilyRibosomal protein L16p8076054 4003717 SCOP2 (2022-06-29)
S [auth Q]SCOP2 SuperfamilyRibosomal protein L16p/L10e8076055 3000884 SCOP2 (2022-06-29)
V [auth T]SCOP2 FamilyRibosomal protein L198089131 4001761 SCOP2 (2022-06-29)
V [auth T]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8089132 3000334 SCOP2 (2022-06-29)
X [auth V]SCOP2 FamilyRibosomal protein l21p8082450 4001630 SCOP2 (2022-06-29)
X [auth V]SCOP2 Superfamilyl21p-like8082451 3002005 SCOP2 (2022-06-29)
Y [auth W]SCOP2 FamilyRibosomal protein L228081521 4001212 SCOP2 (2022-06-29)
Y [auth W]SCOP2 SuperfamilyRibosomal protein L228081522 3001078 SCOP2 (2022-06-29)
AA [auth Y]SCOP2 FamilyRibosomal proteins L24p and L21e8082518 4001752 SCOP2 (2022-06-29)
AA [auth Y]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082519 3000334 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth X]PF00276e4ce4X1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
A [auth 0]PF01016e4ce401 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
L [auth D]PF00181e4ce4D1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
L [auth D]PF03947e4ce4D2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
M [auth E]PF00297e4ce4E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
N [auth F]PF00573e4ce4F1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
O [auth I]PF01281e4ce4I1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
P [auth N]PF00572e4ce4N1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
Q [auth O]PF00238e4ce4O1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
R [auth P]PF00828e4ce4P1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
S [auth Q]PF00252e4ce4Q1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
B [auth 1]PF00830e4ce411 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
T [auth R]PF01196e4ce4R1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
U [auth S]PF00861e4ce4S1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
V [auth T]PF01245e4ce4T1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
W [auth U]PF00453e4ce4U1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
X [auth V]PF00829e4ce4V1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
Y [auth W]PF00237e4ce4W1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
AA [auth Y]PF00467,PF17136e4ce4Y1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
BA [auth b]PF01161e4ce4b1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PF01161ECOD (1.6)
CA [auth c]PF02824e4ce4c2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF02824ECOD (1.6)
CA [auth c]F_UNCLASSIFIEDe4ce4c1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: F_UNCLASSIFIEDECOD (1.6)
C [auth 2]PF06984e4ce421 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF06984ECOD (1.6)
DA [auth h]PF22935e4ce4h1 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF22935ECOD (1.6)
DA [auth h]PF22892e4ce4h2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF22892ECOD (1.6)
EA [auth i]PF04280e4ce4i1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF04280ECOD (1.6)
FA [auth l]PF05046e4ce4l1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
HA [auth u]PF00472e4ce4u1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
D [auth 3]PF00327e4ce431 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
E [auth 5]PF01783e4ce451 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
F [auth 6]PF00471e4ce461 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
G [auth 7]PF00468e4ce471 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
H [auth 8]PF01632e4ce481 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
I [auth 9]PF00444e4ce491 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Z [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
L [auth D]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
N [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
O [auth I]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
Q [auth O]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
R [auth P]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth Q]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
T [auth R]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
U [auth S]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
V [auth T]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
X [auth V]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Y [auth W]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
AA [auth Y]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
BA [auth b]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
C [auth 2]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
EA [auth i]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
HA [auth u]PF00472RF-1 domain (RF-1)RF-1 domain- Family
D [auth 3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
E [auth 5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
G [auth 7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Z [auth X]MRPL23
A [auth 0]MRPL27
J [auth A]16S Ribosomal RNA---
K [auth B]UNASSIGNED RNA---
L [auth D]MRPL2
M [auth E]MRPL3---
N [auth F]MRPL4---
O [auth I]MRPL9
P [auth N]MRPL13---
Q [auth O]MRPL14
R [auth P]MRPL15---
S [auth Q]MRPL16
B [auth 1]MRPL28
T [auth R]MRPL17
U [auth S]MRPL18
V [auth T]MRPL19
W [auth U]MRPL20---
X [auth V]MRPL21
Y [auth W]MRPL22
AA [auth Y]MRPL24
BA [auth b]MRPL38- -
CA [auth c]MRPL39 - -
C [auth 2]MRPL47
DA [auth h]MRPL44
EA [auth i]MRPL45- -
FA [auth l]MRPL49
GA [auth o]MRPL52---
HA [auth u]ICT1 -
IA [auth v],
JA [auth w]
UNASSIGNED HELICES---
KA [auth x]THIOREDOXIN FOLD---
LA [auth z]UNASSIGNED HELICES---
D [auth 3]MRPL30
E [auth 5]MRPL32
F [auth 6]MRPL33---
G [auth 7]MRPL34
H [auth 8]MRPL35- -
I [auth 9]MRPL36---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Z [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
A [auth 0]IPR001684Large ribosomal subunit protein bL27Family
L [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
L [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth D]IPR002171Large ribosomal subunit protein uL2Family
O [auth I]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
O [auth I]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
O [auth I]IPR000244Large ribosomal subunit protein bL9Family
Q [auth O]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth O]IPR000218Large ribosomal subunit protein uL14Family
S [auth Q]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
S [auth Q]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
S [auth Q]IPR016180Large ribosomal subunit protein uL16 domainDomain
S [auth Q]IPR047873Large ribosomal subunit protein uL16Family
B [auth 1]IPR005484Large ribosomal subunit protein uL18Family
B [auth 1]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
T [auth R]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
T [auth R]IPR000456Large ribosomal subunit protein bL17Family
U [auth S]IPR005484Large ribosomal subunit protein uL18Family
U [auth S]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
V [auth T]IPR001857Large ribosomal subunit protein bL19Family
V [auth T]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
V [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth V]IPR028909Large ribosomal subunit protein bL21-likeFamily
X [auth V]IPR001787Large ribosomal subunit protein bL21Family
X [auth V]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Y [auth W]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
Y [auth W]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth W]IPR001063Large ribosomal subunit protein uL22Family
AA [auth Y]IPR003256Large ribosomal subunit protein uL24Family
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth b]IPR036610PEBP-like superfamilyHomologous Superfamily
BA [auth b]IPR008914Phosphatidylethanolamine-binding proteinFamily
BA [auth b]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
CA [auth c]IPR012676TGS-likeHomologous Superfamily
CA [auth c]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
CA [auth c]IPR004095TGSDomain
CA [auth c]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
C [auth 2]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
C [auth 2]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
DA [auth h]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
DA [auth h]IPR014720Double-stranded RNA-binding domainDomain
DA [auth h]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
EA [auth i]IPR032710NTF2-like domain superfamilyHomologous Superfamily
EA [auth i]IPR007379Tim44-like domainDomain
FA [auth l]IPR005484Large ribosomal subunit protein uL18Family
FA [auth l]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
HA [auth u]IPR000352Peptide chain release factor class IDomain
D [auth 3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
D [auth 3]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
D [auth 3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
E [auth 5]IPR002677Large ribosomal subunit protein bL32Family
E [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
G [auth 7]IPR000271Large ribosomal subunit protein bL34Family
H [auth 8]IPR019338Large ribosomal subunit protein bL35mFamily