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Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1pdfa_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
B	d1pdfb_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
C	d1pdfc_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
D	d1pdfd_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
E	d1pdfe_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
F	d1pdff_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
G	d1pdfg_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
H	d1pdfh_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
I	d1pdfi_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
J	d1pdfj_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
K	d1pdfk_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
L	d1pdfl_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
M	d1pdfm_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
N	d1pdfn_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
O	d1pdfo_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
P	d1pdfp_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
Q	d1pdfq_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)
R	d1pdfr_	Low resolution protein structures	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	Bacteriophage T4 3D cryo-EM reconstruction	(Tequatrovirus T4 ) [TaxId: 10665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Baseplate structural protein gp11	8037280	3001519	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GP11_2nd	e1pdfA1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
A	GP11_1st	e1pdfA2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
B	GP11_2nd	e1pdfB1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
B	GP11_1st	e1pdfB2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
C	GP11_2nd	e1pdfC1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
C	GP11_1st	e1pdfC2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
D	GP11_2nd	e1pdfD1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
D	GP11_1st	e1pdfD2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
E	GP11_2nd	e1pdfE1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
E	GP11_1st	e1pdfE2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
F	GP11_2nd	e1pdfF1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
F	GP11_1st	e1pdfF2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
G	GP11_2nd	e1pdfG1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
G	GP11_1st	e1pdfG2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
H	GP11_2nd	e1pdfH1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
H	GP11_1st	e1pdfH2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
I	GP11_2nd	e1pdfI1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
I	GP11_1st	e1pdfI2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
J	GP11_2nd	e1pdfJ1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
J	GP11_1st	e1pdfJ2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
K	GP11_2nd	e1pdfK1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
K	GP11_1st	e1pdfK2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
L	GP11_2nd	e1pdfL1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
L	GP11_1st	e1pdfL2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
M	GP11_2nd	e1pdfM1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
M	GP11_1st	e1pdfM2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
N	GP11_2nd	e1pdfN1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
N	GP11_1st	e1pdfN2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
O	GP11_2nd	e1pdfO1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
O	GP11_1st	e1pdfO2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
P	GP11_2nd	e1pdfP1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
P	GP11_1st	e1pdfP2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
Q	GP11_2nd	e1pdfQ1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
Q	GP11_1st	e1pdfQ2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)
R	GP11_2nd	e1pdfR1	A: beta sandwiches	X: gp11/flagellar cap protein FliD insertion domain (From Topology)	H: gp11/flagellar cap protein FliD insertion domain (From Topology)	T: gp11/flagellar cap protein FliD insertion domain	F: GP11_2nd	ECOD (1.6)
R	GP11_1st	e1pdfR2	A: a+b duplicates or obligate multimers	X: gp11/gp12 receptor-binding domain (From Topology)	H: gp11/gp12 receptor-binding domain (From Topology)	T: gp11/gp12 receptor-binding domain	F: GP11_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF08677	GP11 baseplate wedge protein (GP11)	GP11 baseplate wedge protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	Baseplate structural protein Gp11	-	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR015982	Baseplate structural protein Gp11, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR015976	Bacteriophage T4, Gp11, C-terminal finger domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR043180	Baseplate structural protein Gp11, C-terminal domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR014791	Baseplate structural protein Gp11	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR036214	Baseplate structural protein Gp11 superfamily	Homologous Superfamily