1YDY
Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ydya_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | PLC-like phosphodiesterases | Glycerophosphoryl diester phosphodiesterase | Glycerophosphodiester phosphodiesterase GlpQ | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1ydyb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | PLC-like phosphodiesterases | Glycerophosphoryl diester phosphodiesterase | Glycerophosphodiester phosphodiesterase GlpQ | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Glycerophosphoryl diester phosphodiesterase | 8021934 | 4000418 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PLC-like phosphodiesterases | 8034314 | 3000615 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PLC-like phosphodiesterases | 8034314 | 3000615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03009 | e1ydyA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03009 | ECOD (1.6) |
B | PF03009 | e1ydyB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF03009 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.190 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Phosphatidylinositol (PI) phosphodiesterase | CATH (4.3.0) |
B | 3.20.20.190 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Phosphatidylinositol (PI) phosphodiesterase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03009 | Glycerophosphoryl diester phosphodiesterase family (GDPD) | Glycerophosphoryl diester phosphodiesterase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Glycerophosphoryl diester phosphodiesterase |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030395 | Glycerophosphodiester phosphodiesterase domain | Domain | |
IPR017946 | PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily | Homologous Superfamily |