8FRT

X-ray crystal structure of the N-terminal region from HCMV US11 binding to HLA-A*02:01


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.206 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Diverse cytomegalovirus US11 antagonism and MHC-A evasion strategies reveal a tit-for-tat coevolutionary arms race in hominids.

Zimmermann, C.Watson, G.M.Bauersfeld, L.Berry, R.Ciblis, B.Lan, H.Gerke, C.Oberhardt, V.Fuchs, J.Hofmann, M.Freund, C.Rossjohn, J.Momburg, F.Hengel, H.Halenius, A.

(2024) Proc Natl Acad Sci U S A 121: e2315985121-e2315985121

  • DOI: https://doi.org/10.1073/pnas.2315985121
  • Primary Citation of Related Structures:  
    8FRT, 8FU4

  • PubMed Abstract: 

    Recurrent, ancient arms races between viruses and hosts have shaped both host immunological defense strategies as well as viral countermeasures. One such battle is waged by the glycoprotein US11 encoded by the persisting human cytomegalovirus. US11 mediates degradation of major histocompatibility class I (MHC-I) molecules to prevent CD8+ T-cell activation. Here, we studied the consequences of the arms race between US11 and primate MHC-A proteins, leading us to uncover a tit-for-tat coevolution and its impact on MHC-A diversification. We found that US11 spurred MHC-A adaptation to evade viral antagonism: In an ancestor of great apes, the MHC-A A2 lineage acquired a Pro184Ala mutation, which confers resistance against the ancestral US11 targeting strategy. In response, US11 deployed a unique low-complexity region (LCR), which exploits the MHC-I peptide loading complex to target the MHC-A2 peptide-binding groove. In addition, the global spread of the human HLA-A*02 allelic family prompted US11 to employ a superior LCR strategy with an optimally fitting peptide mimetic that specifically antagonizes HLA-A*02. Thus, despite cytomegaloviruses low pathogenic potential, the increasing commitment of US11 to MHC-A has significantly promoted diversification of MHC-A in hominids.


  • Organizational Affiliation

    Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, 79104 Freiburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Unique short US11 glycoprotein, Beta-2-microglobulin, MHC class I HLA-A fusion444Human herpesvirus 5 strain AD169Homo sapiensMutation(s): 0 
Gene Names: US11B2MCDABP0092HDCMA22PMHC class I HLA-A
UniProt & NIH Common Fund Data Resources
Find proteins for P09727 (Human cytomegalovirus (strain AD169))
Explore P09727 
Go to UniProtKB:  P09727
Find proteins for O78126 (Homo sapiens)
Explore O78126 
Go to UniProtKB:  O78126
Find proteins for P61769 (Homo sapiens)
Explore P61769 
Go to UniProtKB:  P61769
PHAROS:  P61769
GTEx:  ENSG00000166710 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsO78126P09727P61769
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.206 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.386α = 90
b = 80.503β = 113.49
c = 56.082γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)Australia--

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-27
    Type: Initial release