5LHJ

Bottromycin maturation enzyme BotP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.177 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and Substrate Recognition of the Bottromycin Maturation Enzyme BotP.

Mann, G.Huo, L.Adam, S.Nardone, B.Vendome, J.Westwood, N.J.Muller, R.Koehnke, J.

(2016) Chembiochem 17: 2286-2292

  • DOI: https://doi.org/10.1002/cbic.201600406
  • Primary Citation of Related Structures:  
    5LHJ, 5LHK

  • PubMed Abstract: 

    The bottromycins are a family of highly modified peptide natural products, which display potent antimicrobial activity against Gram-positive bacteria, including methicillin-resistant Staphylococcus aureus. Bottromycins have recently been shown to be ribosomally synthesized and post-translationally modified peptides (RiPPs). Unique amongst RiPPs, the precursor peptide BotA contains a C-terminal "follower" sequence, rather than the canonical N-terminal "leader" sequence. We report herein the structural and biochemical characterization of BotP, a leucyl-aminopeptidase-like enzyme from the bottromycin pathway. We demonstrate that BotP is responsible for the removal of the N-terminal methionine from the precursor peptide. Determining the crystal structures of both apo BotP and BotP in complex with Mn 2+ allowed us to model a BotP/substrate complex and to rationalize substrate recognition. Our data represent the first step towards targeted compound modification to unlock the full antibiotic potential of bottro- mycin.


  • Organizational Affiliation

    School of Chemistry and Biomedical Sciences Research Centre, University of St. Andrews, North Haugh, St. Andrews, KY16 9ST, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine aminopeptidase 2, chloroplastic504Streptomyces sp. BC16019Mutation(s): 0 
Gene Names: botP
EC: 3.4.11 (PDB Primary Data), 3.4.11.1 (PDB Primary Data)
UniProt
Find proteins for K4MHW2 (Streptomyces sp. BC16019)
Explore K4MHW2 
Go to UniProtKB:  K4MHW2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK4MHW2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.177 
  • Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 152.42α = 90
b = 152.42β = 90
c = 100.896γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
DFGGermanyKO4116/3-1
Wellcome TrustUnited Kingdom086036

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-12
    Type: Initial release
  • Version 1.1: 2016-12-14
    Changes: Database references