Download MendeleyThe structure of first dimeric archaeal N-acetyl glutamate kinase reveals an intermediate conformation of the enzyme in the catalytic cycle
Ramya, S., Preethi, R., Kuramitsu, S., Yokoyama, S., Kumarevel, T.S., Karthe, P.To be published.
3U6U
Crystal structure of the putative acetylglutamate kinase from thermus thermophilus
- PDB DOI: https://doi.org/10.2210/pdb3U6U/pdb
- Entry: 3U6U supersedes: 2EGX
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-10-13 Released: 2011-11-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.237
- R-Value Work: 0.222
- R-Value Observed: 0.225
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative acetylglutamate kinase | A, B [auth C] | 269 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA1903 |  |
UniProt | |||||
Find proteins for Q5SH27 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SH27 Go to UniProtKB: Q5SH27 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SH27 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth C], F [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.237
- R-Value Work: 0.222
- R-Value Observed: 0.225
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 155.601 | α = 90 |
| b = 155.601 | β = 90 |
| c = 79.535 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BSS | data collection |
| SOLVE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-11-16 Deposition Author(s): Karthe, P., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
- This entry supersedes: 2EGX
Revision History (Full details and data files)
- Version 1.0: 2011-11-16
Type: Initial release - Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations
