3U5R

Crystal structure of a hypothetical protein SMc02350 from Sinorhizobium meliloti 1021

PDB DOI: https://doi.org/10.2210/pdb3U5R/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): Sinorhizobium meliloti 1021
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-10-11 Released: 2011-10-19
Deposition Author(s): Agarwal, R., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.232
R-Value Work: 0.182
R-Value Observed: 0.184

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a hypothetical protein SMc02350 from Sinorhizobium meliloti 1021

Agarwal, R., Almo, S.C., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 94.06 kDa
Atom Count: 5,981
Modelled Residue Count: 745
Deposited Residue Count: 872
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein	A [auth E], B [auth F], C [auth G], D [auth H]	218	Sinorhizobium meliloti 1021	Mutation(s): 0 Gene Names: R02577, SMc02350
UniProt
Find proteins for Q92MN6 (Rhizobium meliloti (strain 1021)) Explore Q92MN6 Go to UniProtKB: Q92MN6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q92MN6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.232
R-Value Work: 0.182
R-Value Observed: 0.184
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.657	α = 82.65
b = 58.567	β = 83.58
c = 85.476	γ = 66.29

Software Package:

Software Name	Purpose
CBASS	data collection
MOLREP	phasing
ARP/wARP	model building
Coot	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-19

Deposition Author(s):

Swaminathan, S.

New York Structural Genomics Research Consortium (NYSGRC)

Revision History (Full details and data files)

Version 1.0: 2011-10-19
Type: Initial release
Version 1.1: 2023-09-13
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.