Download MendeleyCrystal Structure of Phosphoserine Phosphatase from Vibrio Cholerae
Patskovsky, Y., Ramagopal, U., Toro, R., Rutter, M., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3N28
Crystal structure of probable phosphoserine phosphatase from vibrio cholerae, unliganded form
- PDB DOI: https://doi.org/10.2210/pdb3N28/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio cholerae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-05-17 Released: 2010-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.253
- R-Value Work: 0.201
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoserine phosphatase | 335 | Vibrio cholerae | Mutation(s): 0 Gene Names: VC_2345 |  | |
UniProt | |||||
Find proteins for Q9KPM2 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KPM2 Go to UniProtKB: Q9KPM2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KPM2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.253
- R-Value Work: 0.201
- R-Value Observed: 0.202
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.941 | α = 90 |
| b = 73.941 | β = 90 |
| c = 180.584 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| RESOLVE | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-07-14 Deposition Author(s): Patskovsky, Y., Ramagopal, U., Toro, R., Rutter, M., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
