3H49

Crystal structure of a putative Ribokinase (Apo Form) from E.coli at 1.8A resolution

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.213 

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This is version 1.2 of the entry. See complete history. 


Literature

Crystal structure of a putative Ribokinase (Apo Form) from E.coli at 1.8A resolution.

Satyanarayana, L., Eswaramoorthy, S., Burley, S.K., Swaminathan, S.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribokinase
A, B
325Escherichia coli K-12Mutation(s): 0 
Gene Names: b1772, JW5289, ydjH
EC: 2.7.1
UniProt
Find proteins for P77493 (Escherichia coli (strain K12))
Explore P77493 
Go to UniProtKB:  P77493
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP77493
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.213 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.088α = 90
b = 73.718β = 96.49
c = 82.153γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
SHELXCDphasing
SHARPphasing
CNSrefinement
DENZOdata reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-04-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2021-02-10
    Changes: Database references, Derived calculations, Structure summary