2J9T

BipD of Burkholderia Pseudomallei


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.210 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Self-Chaperoning of the Type III Secretion System Needle Tip Proteins Ipad and Bipd.

Johnson, S.Roversi, P.Espina, M.Olive, A.Deane, J.E.Birket, S.Field, T.Picking, W.D.Blocker, A.J.Galyov, E.E.Picking, W.L.Lea, S.M.

(2007) J Biol Chem 282: 4035

  • DOI: https://doi.org/10.1074/jbc.M607945200
  • Primary Citation of Related Structures:  
    2IXR, 2J0N, 2J0O, 2J9T, 2JAA

  • PubMed Abstract: 

    Bacteria expressing type III secretion systems (T3SS) have been responsible for the deaths of millions worldwide, acting as key virulence elements in diseases ranging from plague to typhoid fever. The T3SS is composed of a basal body, which traverses both bacterial membranes, and an external needle through which effector proteins are secreted. We report multiple crystal structures of two proteins that sit at the tip of the needle and are essential for virulence: IpaD from Shigella flexneri and BipD from Burkholderia pseudomallei. The structures reveal that the N-terminal domains of the molecules are intramolecular chaperones that prevent premature oligomerization, as well as sharing structural homology with proteins involved in eukaryotic actin rearrangement. Crystal packing has allowed us to construct a model for the tip complex that is supported by mutations designed using the structure.


  • Organizational Affiliation

    Laboratory of Molecular Biophysics, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, Oxon OX1 3QU, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MEMBRANE ANTIGEN
A, B
303Burkholderia pseudomalleiMutation(s): 0 
UniProt
Find proteins for Q63K37 (Burkholderia pseudomallei (strain K96243))
Explore Q63K37 
Go to UniProtKB:  Q63K37
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ63K37
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.210 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 136.47α = 90
b = 89.84β = 90
c = 50.15γ = 90
Software Package:
Software NamePurpose
TNTrefinement
MOSFLMdata reduction
SCALAdata scaling
SHELXDphasing
SHARPphasing
SOLOMONphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-11-20
    Type: Initial release
  • Version 1.1: 2014-10-22
    Changes: Database references, Derived calculations, Non-polymer description, Other, Version format compliance