1VL4

CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF A DNA GYRASE (TM0727) FROM THERMOTOGA MARITIMA MSB8 AT 1.95 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.

Rife, C.Schwarzenbacher, R.McMullan, D.Abdubek, P.Ambing, E.Axelrod, H.Biorac, T.Canaves, J.M.Chiu, H.J.Deacon, A.M.DiDonato, M.Elsliger, M.A.Godzik, A.Grittini, C.Grzechnik, S.K.Hale, J.Hampton, E.Han, G.W.Haugen, J.Hornsby, M.Jaroszewski, L.Klock, H.E.Koesema, E.Kreusch, A.Kuhn, P.Lesley, S.A.Miller, M.D.Moy, K.Nigoghossian, E.Paulsen, J.Quijano, K.Reyes, R.Sims, E.Spraggon, G.Stevens, R.C.van den Bedem, H.Velasquez, J.Vincent, J.White, A.Wolf, G.Xu, Q.Hodgson, K.O.Wooley, J.Wilson, I.A.

(2005) Proteins 61: 444-448


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
pmbA-related protein
A, B
447Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: TM0727
UniProt
Find proteins for Q9WZI6 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WZI6 
Go to UniProtKB:  Q9WZI6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WZI6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.367α = 90
b = 106.637β = 90
c = 120.382γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
autoSHARPphasing
SOLOMONphasing
REFMACrefinement
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-09-21
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Source and taxonomy, Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description
  • Version 1.4: 2023-01-25
    Changes: Database references
  • Version 1.5: 2024-05-22
    Changes: Data collection, Refinement description