7K08

Cryo-EM structure of the nonameric EscV cytosolic domain from the type III secretion system


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM analysis of the SctV cytosolic domain from the enteropathogenic E. coli T3SS injectisome.

Majewski, D.D.Lyons, B.J.E.Atkinson, C.E.Strynadka, N.C.J.

(2020) J Struct Biol 212: 107660-107660

  • DOI: https://doi.org/10.1016/j.jsb.2020.107660
  • Primary Citation of Related Structures:  
    7K08

  • PubMed Abstract: 

    The bacterial injectisome and flagella both rely on type III secretion systems for their assembly. The syringe-like injectisome creates a continuous channel between the bacterium and the host cell, through which signal-modulating effector proteins are secreted. The inner membrane pore protein SctV controls the hierarchy of substrate selection and may also be involved in energizing secretion. We present the 4.7 Å cryo-EM structure of the SctV cytosolic domain (SctV C ) from the enteropathogenic Escherichia coli injectisome. SctV C forms a nonameric ring with primarily electrostatic interactions between its subunits. Molecular dynamics simulations show that monomeric SctV C maintains a closed conformation, in contrast with previous studies on flagellar homologue FlhA. Comparison with substrate-bound homologues suggest that a conformational change would be required to accommodate binding partners.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology and the Center for Blood Research, University of British Columbia, Vancouver, British Columbia, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Translocator EscV
A, B, C, D, E
A, B, C, D, E, F, G, H, I
342Escherichia coli O127:H6 str. E2348/69Mutation(s): 0 
Gene Names: escVE2348C_3949
UniProt
Find proteins for B7UMA7 (Escherichia coli O127:H6 (strain E2348/69 / EPEC))
Explore B7UMA7 
Go to UniProtKB:  B7UMA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB7UMA7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada--
Natural Sciences and Engineering Research Council (NSERC, Canada)Canada--
Howard Hughes Medical Institute (HHMI)Canada--

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-25
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Data collection, Database references