7DEH

Solution structure of cecropin P1 in dodecylphosphocholine micelles

PDB DOI: https://doi.org/10.2210/pdb7DEH/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Ascaris suum
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2020-11-04 Released: 2021-11-17
Deposition Author(s): Gu, H., Kumeta, H., Aizawa, T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Three-Dimensional Structure of the Antimicrobial Peptide Cecropin P1 in Dodecylphosphocholine Micelles and the Role of the C-Terminal Residues

Gu, H., Kato, T., Kumeta, H., Kumaki, Y., Tsukamoto, T., Kikukawa, T., Demura, M., Ishida, H., Vogel, H.J., Aizawa, T.

(2022) ACS Omega 7: 31924-31934

DOI: https://doi.org/10.1021/acsomega.2c02778

Macromolecule Content

Total Structure Weight: 3.35 kDa
Atom Count: 234
Modelled Residue Count: 31
Deposited Residue Count: 31
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cecropin-P1	A	31	Ascaris suum	Mutation(s): 0 Gene Names: ASCEC-1 Membrane Entity: Yes
UniProt
Find proteins for P14661 (Ascaris suum) Explore P14661 Go to UniProtKB: P14661
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14661
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 20
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-11-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-11-17
Type: Initial release
Version 1.1: 2022-09-21
Changes: Database references
Version 1.2: 2023-06-14
Changes: Other
Version 1.3: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.