7APK

Structure of the human THO - UAP56 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the human core transcription-export complex reveals a hub for multivalent interactions.

Puhringer, T.Hohmann, U.Fin, L.Pacheco-Fiallos, B.Schellhaas, U.Brennecke, J.Plaschka, C.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.61503
  • Primary Citation of Related Structures:  
    7APK

  • PubMed Abstract: 

    The export of mRNA from nucleus to cytoplasm requires the conserved and essential transcription and export (TREX) complex (THO-UAP56/DDX39B-ALYREF). TREX selectively binds mRNA maturation marks and licenses mRNA for nuclear export by loading the export factor NXF1-NXT1. How TREX integrates these marks and achieves high selectivity for mature mRNA is poorly understood. Here, we report the cryo-electron microscopy structure of the human THO-UAP56/DDX39B complex at 3.3 Å resolution. The seven-subunit THO-UAP56/DDX39B complex multimerizes into a 28-subunit tetrameric assembly, suggesting that selective recognition of mature mRNA is facilitated by the simultaneous sensing of multiple, spatially distant mRNA regions and maturation marks. Two UAP56/DDX39B RNA helicases are juxtaposed at each end of the tetramer, which would allow one bivalent ALYREF protein to bridge adjacent helicases and regulate the TREX-mRNA interaction. Our structural and biochemical results suggest a conserved model for TREX complex function that depends on multivalent interactions between proteins and mRNA.


  • Organizational Affiliation

    Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 1A,
H [auth I],
P [auth a],
W [auth i]
711Homo sapiensMutation(s): 0 
Gene Names: THOC1HPR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96FV9 (Homo sapiens)
Explore Q96FV9 
Go to UniProtKB:  Q96FV9
PHAROS:  Q96FV9
GTEx:  ENSG00000079134 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96FV9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 2B,
I [auth J],
Q [auth b],
X [auth j]
1,226Homo sapiensMutation(s): 0 
Gene Names: THOC2CXorf3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NI27 (Homo sapiens)
Explore Q8NI27 
Go to UniProtKB:  Q8NI27
PHAROS:  Q8NI27
GTEx:  ENSG00000125676 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NI27
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 3C,
J [auth K],
R [auth c],
Y [auth k]
395Homo sapiensMutation(s): 0 
Gene Names: THOC3
UniProt & NIH Common Fund Data Resources
Find proteins for Q96J01 (Homo sapiens)
Explore Q96J01 
Go to UniProtKB:  Q96J01
GTEx:  ENSG00000051596 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96J01
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 5 homologD [auth E],
K [auth M],
S [auth e],
Z [auth m]
683Homo sapiensMutation(s): 0 
Gene Names: THOC5C22orf19KIAA0983
UniProt & NIH Common Fund Data Resources
Find proteins for Q13769 (Homo sapiens)
Explore Q13769 
Go to UniProtKB:  Q13769
PHAROS:  Q13769
GTEx:  ENSG00000100296 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13769
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 6 homologAA [auth n],
E [auth F],
L [auth N],
T [auth f]
341Homo sapiensMutation(s): 0 
Gene Names: THOC6WDR58PSEC0006
UniProt & NIH Common Fund Data Resources
Find proteins for Q86W42 (Homo sapiens)
Explore Q86W42 
Go to UniProtKB:  Q86W42
PHAROS:  Q86W42
GTEx:  ENSG00000131652 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86W42
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
THO complex subunit 7 homologBA [auth o],
F [auth G],
M [auth O],
U [auth g]
204Homo sapiensMutation(s): 0 
Gene Names: THOC7NIF3L1BP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6I9Y2 (Homo sapiens)
Explore Q6I9Y2 
Go to UniProtKB:  Q6I9Y2
PHAROS:  Q6I9Y2
GTEx:  ENSG00000163634 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6I9Y2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Spliceosome RNA helicase DDX39BCA [auth p],
G [auth H],
N [auth P],
V [auth h]
451Homo sapiensMutation(s): 0 
Gene Names: DDX39BBAT1UAP56
EC: 3.6.4.13
UniProt & NIH Common Fund Data Resources
Find proteins for Q13838 (Homo sapiens)
Explore Q13838 
Go to UniProtKB:  Q13838
PHAROS:  Q13838
GTEx:  ENSG00000198563 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13838
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
THOC2 anchor (putative)DA [auth x],
O [auth X]
37Homo sapiensMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.13

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationAustriaP2GEP3_188343

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release