6YNW

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - central stalk/cring


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization.

Flygaard, R.K.Muhleip, A.Tobiasson, V.Amunts, A.

(2020) Nat Commun 11: 5342-5342

  • DOI: https://doi.org/10.1038/s41467-020-18993-6
  • Primary Citation of Related Structures:  
    6YNV, 6YNW, 6YNX, 6YNY, 6YNZ, 6YO0

  • PubMed Abstract: 

    Mitochondrial ATP synthases form functional homodimers to induce cristae curvature that is a universal property of mitochondria. To expand on the understanding of this fundamental phenomenon, we characterized the unique type III mitochondrial ATP synthase in its dimeric and tetrameric form. The cryo-EM structure of a ciliate ATP synthase dimer reveals an unusual U-shaped assembly of 81 proteins, including a substoichiometrically bound ATPTT2, 40 lipids, and co-factors NAD and CoQ. A single copy of subunit ATPTT2 functions as a membrane anchor for the dimeric inhibitor IF 1 . Type III specific linker proteins stably tie the ATP synthase monomers in parallel to each other. The intricate dimer architecture is scaffolded by an extended subunit-a that provides a template for both intra- and inter-dimer interactions. The latter results in the formation of tetramer assemblies, the membrane part of which we determined to 3.1 Å resolution. The structure of the type III ATP synthase tetramer and its associated lipids suggests that it is the intact unit propagating the membrane curvature.


  • Organizational Affiliation

    Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165, Solna, Sweden.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
subunit c76Tetrahymena thermophilaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q951A5 (Tetrahymena thermophila)
Explore Q951A5 
Go to UniProtKB:  Q951A5
Entity Groups  
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UniProt GroupQ951A5
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
subunit gammaK [auth g]299Tetrahymena thermophilaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q22Z05 (Tetrahymena thermophila (strain SB210))
Explore Q22Z05 
Go to UniProtKB:  Q22Z05
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UniProt GroupQ22Z05
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
subunit deltaL [auth d]158Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for Q22ZH1 (Tetrahymena thermophila (strain SB210))
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UniProt GroupQ22ZH1
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
subunit epsilonM [auth e]71Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for I7MMW3 (Tetrahymena thermophila (strain SB210))
Explore I7MMW3 
Go to UniProtKB:  I7MMW3
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UniProt GroupI7MMW3
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSwedenNT_2015-04107
European Research Council (ERC)SwedenERC-2018-StG-805230
Knut and Alice Wallenberg FoundationSweden2018.0080

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-30
    Type: Initial release
  • Version 1.1: 2020-11-11
    Changes: Database references