Download MendeleyCrystal structure of Inorganic pyrophosphatase from Legionella pneumophila Philadelphia 1
Abendroth, J., Mayclin, S.J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6N1C
Crystal structure of Inorganic pyrophosphatase from Legionella pneumophila Philadelphia 1
- PDB DOI: https://doi.org/10.2210/pdb6N1C/pdb
- Classification: HYDROLASE
- Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-11-08 Released: 2018-12-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.232
- R-Value Work: 0.193
- R-Value Observed: 0.195
wwPDB Validation 3D Report Full Report
Currently 6N1C does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Inorganic pyrophosphatase | 186 | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | Mutation(s): 0 Gene Names: ppa, lpg2764 EC: 3.6.1.1 |  | |
UniProt | |||||
Find proteins for Q5ZRW2 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZRW2 Go to UniProtKB: Q5ZRW2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZRW2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MRD Query on MRD | K [auth B] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| MPD Query on MPD | I [auth A] L [auth B] M [auth C] O [auth D] Q [auth E] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ALA Query on ALA | J [auth A], P [auth E] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | ||
| NA Query on NA | G [auth A], H [auth A], N [auth D], T [auth F] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.232
- R-Value Work: 0.193
- R-Value Observed: 0.195
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.08 | α = 90 |
| b = 119.94 | β = 109.59 |
| c = 74.9 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
| ARP/wARP | model building |
| BUCCANEER | model building |
| Coot | model building |
Structure Validation
Currently 6N1C does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2018-12-19 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-12-19
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
