6KSW

Cryo-EM structure of the human concentrative nucleoside transporter CNT3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of the human concentrative nucleoside transporter CNT3.

Zhou, Y.X.Liao, L.H.Wang, C.Li, J.L.Chi, P.Xiao, Q.J.Liu, Q.Guo, L.Sun, L.F.Deng, D.

(2020) PLoS Biol 18: e3000790-e3000790

  • DOI: https://doi.org/10.1371/journal.pbio.3000790
  • Primary Citation of Related Structures:  
    6KSW

  • PubMed Abstract: 

    Concentrative nucleoside transporters (CNTs), members of the solute carrier (SLC) 28 transporter family, facilitate the salvage of nucleosides and therapeutic nucleoside derivatives across the plasma membrane. Despite decades of investigation, the structures of human CNTs remain unknown. We determined the cryogenic electron microscopy (cryo-EM) structure of human CNT (hCNT) 3 at an overall resolution of 3.6 Å. As with its bacterial homologs, hCNT3 presents a trimeric architecture with additional N-terminal transmembrane helices to stabilize the conserved central domains. The conserved binding sites for the substrate and sodium ions unravel the selective nucleoside transport and distinct coupling mechanism. Structural comparison of hCNT3 with bacterial homologs indicates that hCNT3 is stabilized in an inward-facing conformation. This study provides the molecular determinants for the transport mechanism of hCNTs and potentially facilitates the design of nucleoside drugs.


  • Organizational Affiliation

    Division of Obstetrics, Key Laboratory of Birth Defects and Related Disease of Women and Children of MOE, State Key Laboratory of Biotherapy, West China Second Hospital, Sichuan University, Chengdu, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 28 member 3A [auth C],
B [auth A],
C [auth B]
632Homo sapiensMutation(s): 0 
Gene Names: SLC28A3CNT3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HAS3 (Homo sapiens)
Explore Q9HAS3 
Go to UniProtKB:  Q9HAS3
PHAROS:  Q9HAS3
GTEx:  ENSG00000197506 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HAS3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2016YFA0502700

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-26
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references