5W0T

Crystal structure of monomeric Msp1 from S. cerevisiae

  • Classification: HYDROLASE
  • Organism(s): Saccharomyces cerevisiae S288C
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): No 

  • Deposited: 2017-05-31 Released: 2017-08-02 
  • Deposition Author(s): Keenan, R.J., Wohlever, M.L., Mateja, A.M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Center for Research Resources (NIH/NCRR), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Msp1 Is a Membrane Protein Dislocase for Tail-Anchored Proteins.

Wohlever, M.L.Mateja, A.McGilvray, P.T.Day, K.J.Keenan, R.J.

(2017) Mol Cell 67: 194-202.e6

  • DOI: https://doi.org/10.1016/j.molcel.2017.06.019
  • Primary Citation of Related Structures:  
    5W0T

  • PubMed Abstract: 

    Mislocalized tail-anchored (TA) proteins of the outer mitochondrial membrane are cleared by a newly identified quality control pathway involving the conserved eukaryotic protein Msp1 (ATAD1 in humans). Msp1 is a transmembrane AAA-ATPase, but its role in TA protein clearance is not known. Here, using purified components reconstituted into proteoliposomes, we show that Msp1 is both necessary and sufficient to drive the ATP-dependent extraction of TA proteins from the membrane. A crystal structure of the Msp1 cytosolic region modeled into a ring hexamer suggests that active Msp1 contains a conserved membrane-facing surface adjacent to a central pore. Structure-guided mutagenesis of the pore residues shows that they are critical for TA protein extraction in vitro and for functional complementation of an msp1 deletion in yeast. Together, these data provide a molecular framework for Msp1-dependent extraction of mislocalized TA proteins from the outer mitochondrial membrane.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, The University of Chicago, 929 East 57th Street, Chicago, IL 60637, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein MSP1304Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MSP1YTA4YGR028W
UniProt
Find proteins for P28737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P28737 
Go to UniProtKB:  P28737
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP28737
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 
  • Space Group: P 32 1 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.351α = 90
b = 56.351β = 90
c = 206.707γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data scaling
PDB_EXTRACTdata extraction
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41 GM103403
National Institutes of Health/National Center for Research Resources (NIH/NCRR)United StatesS10 RR029205
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2R01 GM086487
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States2T32HL7381
National Institutes of Health/National Cancer Institute (NIH/NCI)United States5T32CA9594
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1F32GM119194
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM007183

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-02
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Refinement description
  • Version 1.2: 2019-12-04
    Changes: Author supporting evidence