3AXJ

High resolution crystal structure of C3PO

PDB DOI: https://doi.org/10.2210/pdb3AXJ/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-04-07 Released: 2011-04-20
Deposition Author(s): Yuan, Y.A., Yang, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.238
R-Value Work: 0.203
R-Value Observed: 0.204

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

High resolution crystal structure of C3PO

Yuan, Y.A., Yang, X.

To be published.

Macromolecule Content

Total Structure Weight: 63.48 kDa
Atom Count: 3,991
Modelled Residue Count: 465
Deposited Residue Count: 547
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GM27569p	A	249	Drosophila melanogaster	Mutation(s): 0 Gene Names: trsn, translin, CG11761, Dmel_CG11761
UniProt
Find proteins for Q7JVK6 (Drosophila melanogaster) Explore Q7JVK6 Go to UniProtKB: Q7JVK6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7JVK6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Translin associated factor X, isoform B	B	298	Drosophila melanogaster	Mutation(s): 1 Gene Names: Trax, Dmel_CG5063
UniProt
Find proteins for Q9VF77 (Drosophila melanogaster) Explore Q9VF77 Go to UniProtKB: Q9VF77
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9VF77
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.238
R-Value Work: 0.203
R-Value Observed: 0.204
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.676	α = 90
b = 114.72	β = 90
c = 123.909	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SHARP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-04-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-04-20
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.