2OM7

Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.4 of the entry. See complete history


Literature

Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.

Connell, S.R.Takemoto, C.Wilson, D.N.Wang, H.Murayama, K.Terada, T.Shirouzu, M.Rost, M.Schuler, M.Giesebrecht, J.Dabrowski, M.Mielke, T.Fucini, P.Yokoyama, S.Spahn, C.M.

(2007) Mol Cell 25: 751-764

  • DOI: https://doi.org/10.1016/j.molcel.2007.01.027
  • Primary Citation of Related Structures:  
    2OM7

  • PubMed Abstract: 

    Elongation factor G (EF-G) catalyzes tRNA translocation on the ribosome. Here a cryo-EM reconstruction of the 70S*EF-G ribosomal complex at 7.3 A resolution and the crystal structure of EF-G-2*GTP, an EF-G homolog, at 2.2 A resolution are presented. EF-G-2*GTP is structurally distinct from previous EF-G structures, and in the context of the cryo-EM structure, the conformational changes are associated with ribosome binding and activation of the GTP binding pocket. The P loop and switch II approach A2660-A2662 in helix 95 of the 23S rRNA, indicating an important role for these conserved bases. Furthermore, the ordering of the functionally important switch I and II regions, which interact with the bound GTP, is dependent on interactions with the ribosome in the ratcheted conformation. Therefore, a network of interaction with the ribosome establishes the active GTP conformation of EF-G and thus facilitates GTP hydrolysis and tRNA translocation.


  • Organizational Affiliation

    Institut für Medizinische Physik und Biophysik, Charite-Universitätsmedizin Berlin, Ziegelstrasse 5-9, 10117 Berlin, Germany.


Macromolecules

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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12K [auth E]135Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for Q5SHN3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SHN3
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L1L [auth K]229Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for Q5SLP7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Elongation factor GM [auth L]691Thermus thermophilusMutation(s): 0 
Gene Names: fusAfus
UniProt
Find proteins for Q5SHN5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SHN5
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2256Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P80371 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP80371
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Entity ID: 1
MoleculeChains LengthOrganismImage
Fragment of 16S rRNA (h14)12Thermus thermophilus
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Entity ID: 2
MoleculeChains LengthOrganismImage
Fragment of 16S rRNA (h15)28Thermus thermophilus
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Entity ID: 3
MoleculeChains LengthOrganismImage
Fragment of 16S rRNA (h44)96Thermus thermophilus
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Entity ID: 4
MoleculeChains LengthOrganismImage
16S ribosomal RNA (H5)303Thermus thermophilus
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Entity ID: 5
MoleculeChains LengthOrganismImage
Fragment of23S rRNA (H95)E [auth F]29Thermus thermophilus
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Entity ID: 6
MoleculeChains LengthOrganismImage
Fragment of23S rRNA (H68)F [auth G]54Thermus thermophilus
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Entity ID: 7
MoleculeChains LengthOrganismImage
Fragment of23S rRNA (H89)G [auth H]42Thermus thermophilus
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Entity ID: 8
MoleculeChains LengthOrganismImage
Fragment of23S rRNA (H42-44)H [auth I]58Thermus thermophilus
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Entity ID: 9
MoleculeChains LengthOrganismImage
Fragment of23S rRNA (H76)I [auth J]102Thermus thermophilus
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Entity ID: 10
MoleculeChains LengthOrganismImage
p/E-tRNAJ [auth M]74Thermus thermophilus
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPIDER

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-01-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2014-03-12
    Changes: Derived calculations
  • Version 1.3: 2018-07-18
    Changes: Data collection, Database references
  • Version 1.4: 2023-12-27
    Changes: Data collection, Database references, Derived calculations, Refinement description