YE1: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (3R)-4-({3-[(2-{[(3,5-DIHYDROXYPHENYL)ACETYL]AMINO}ETHYL)AMINO]-3-OXOPROPYL}AMINO)-3-HYDROXY-2,2-DIMETHYL-4-OXOBUTYL DIHYDROGEN DIPHOSPHATE
YE1 is a Ligand Of Interest in 5KAG designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5KAG_YE1_C_501 | 76% | 27% | 0.125 | 0.963 | 1.8 | 1.28 | 6 | 7 | 0 | 0 | 100% | 1 |
5KAG_YE1_K_501 | 75% | 28% | 0.13 | 0.965 | 1.76 | 1.3 | 9 | 8 | 0 | 0 | 100% | 1 |
5KAG_YE1_D_501 | 74% | 23% | 0.131 | 0.962 | 2.08 | 1.25 | 6 | 8 | 2 | 0 | 100% | 1 |
5KAG_YE1_G_501 | 71% | 22% | 0.139 | 0.96 | 2.1 | 1.31 | 6 | 8 | 3 | 0 | 100% | 1 |
5KAG_YE1_A_501 | 71% | 18% | 0.14 | 0.961 | 2.33 | 1.38 | 7 | 10 | 2 | 0 | 100% | 1 |
5KAG_YE1_L_501 | 70% | 24% | 0.138 | 0.956 | 1.86 | 1.42 | 7 | 10 | 1 | 0 | 100% | 1 |
5KAG_YE1_E_501 | 70% | 27% | 0.141 | 0.959 | 1.8 | 1.29 | 7 | 9 | 2 | 0 | 100% | 1 |
5KAG_YE1_F_501 | 69% | 26% | 0.14 | 0.957 | 1.81 | 1.33 | 4 | 8 | 3 | 0 | 100% | 1 |
5KAG_YE1_I_501 | 69% | 25% | 0.136 | 0.952 | 1.92 | 1.29 | 7 | 8 | 1 | 0 | 100% | 1 |
5KAG_YE1_B_501 | 68% | 25% | 0.147 | 0.96 | 1.8 | 1.42 | 8 | 8 | 1 | 0 | 100% | 1 |
5KAG_YE1_H_501 | 62% | 25% | 0.161 | 0.953 | 1.93 | 1.29 | 8 | 7 | 2 | 0 | 100% | 1 |
5KAG_YE1_J_501 | 59% | 22% | 0.148 | 0.931 | 2.2 | 1.26 | 9 | 9 | 4 | 0 | 100% | 1 |
4YLH_YE1_D_502 | 83% | 12% | 0.119 | 0.979 | 2.55 | 1.68 | 21 | 15 | 2 | 0 | 100% | 1 |
5KAH_YE1_F_501 | 61% | 23% | 0.172 | 0.961 | 2.02 | 1.36 | 9 | 9 | 2 | 0 | 100% | 1 |
2NP9_YE1_C_999 | 46% | 14% | 0.167 | 0.902 | 1.87 | 2.18 | 9 | 12 | 3 | 0 | 100% | 1 |
2PG8_YE1_C_999 | 14% | 13% | 0.327 | 0.878 | 1.87 | 2.23 | 9 | 13 | 6 | 0 | 100% | 1 |