Ligand validation:5YDI

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5YDI designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5YDI_NAG_C_804	6%	70%	0.315	0.748	0.37	0.75	-	1	0	0	100%	0.9333
5YDI_NAG_A_802	5%	18%	0.38	0.796	0.56	3.08	-	7	0	0	100%	0.9333
5YDI_NAG_A_801	2%	77%	0.455	0.764	0.29	0.61	-	-	0	0	100%	0.9333
6ARY_NAG_B_802	58%	37%	0.164	0.943	1.15	1.39	1	1	0	0	100%	0.9333
6ARX_NAG_B_1001	40%	39%	0.218	0.931	1.18	1.27	1	2	0	0	100%	0.9333
5YDH_NAG_B_817	6%	70%	0.414	0.849	0.37	0.75	-	1	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.