Ligand validation:5YB0

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 5YB0 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5YB0_PLP_K_401	72%	10%	0.123	0.946	2.72	1.83	3	6	2	0	100%	1
5YB0_PLP_B_401	68%	8%	0.152	0.965	2.77	2.13	3	5	4	0	100%	1
5YB0_PLP_F_401	60%	9%	0.174	0.96	2.69	2.02	3	6	5	0	100%	1
5YB0_PLP_C_401	58%	12%	0.153	0.931	2.75	1.58	3	5	3	0	100%	1
5YB0_PLP_E_401	49%	7%	0.199	0.948	2.79	2.28	3	8	3	0	100%	1
5YB0_PLP_D_401	49%	10%	0.208	0.956	2.58	1.91	3	4	3	0	100%	1
5YB0_PLP_I_401	44%	7%	0.163	0.889	2.96	1.97	3	5	0	0	100%	1
5YB0_PLP_G_401	35%	11%	0.24	0.931	2.49	1.87	3	5	1	0	100%	1
5YB0_PLP_A_401	31%	12%	0.238	0.909	2.47	1.75	3	7	9	0	100%	1
5YB0_PLP_H_401	28%	7%	0.26	0.914	2.66	2.37	4	6	4	0	100%	1
5YD2_PLP_A_402	76%	8%	0.127	0.963	2.34	2.52	3	6	1	0	100%	1
2BIE_PLP_B_1361	100%	32%	0.039	0.989	1.43	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	40%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	23%	0.045	0.993	1.94	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	17%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375
1JF9_PLP_A_500	100%	14%	0.047	0.994	1.28	2.78	1	11	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.