KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 5FVN designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5FVN_KDO_E_403 | 48% | 40% | 0.161 | 0.914 | 0.68 | 1.7 | - | 3 | 3 | 0 | 94% | 0.9375 |
| 5FVN_KDO_D_413 | 32% | 36% | 0.195 | 0.88 | 0.9 | 1.68 | 1 | 3 | 2 | 0 | 94% | 0.9375 |
| 5FVN_KDO_A_412 | 25% | 41% | 0.236 | 0.886 | 0.88 | 1.44 | 1 | 3 | 2 | 0 | 94% | 0.9375 |
| 8FUX_KDO_A_405 | 97% | 9% | 0.054 | 0.982 | 2.76 | 1.86 | 3 | 8 | 0 | 0 | 94% | 0.9375 |
| 3K8D_KDO_D_1244 | 96% | 11% | 0.064 | 0.983 | 2.6 | 1.77 | 6 | 6 | 0 | 1 | 94% | 0.9375 |
| 3DUR_KDO_D_303 | 96% | 42% | 0.063 | 0.97 | 1.22 | 1.09 | 1 | 1 | 0 | 0 | 100% | 1 |
| 4PF6_KDO_A_401 | 94% | 31% | 0.086 | 0.987 | 1.85 | 1.03 | 4 | 1 | 0 | 0 | 100% | 1 |
| 3T4Y_KDO_B_303 | 90% | 20% | 0.073 | 0.955 | 2.06 | 1.52 | 6 | 4 | 0 | 0 | 100% | 1 |
