DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 4IXR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4IXR_DGD_C_517 | 13% | 37% | 0.289 | 0.872 | 1.21 | 1.25 | 6 | 6 | 0 | 0 | 80% | 0.803 |
4IXR_DGD_c_517 | 12% | 36% | 0.303 | 0.846 | 1.21 | 1.31 | 10 | 7 | 0 | 0 | 94% | 0.9394 |
4IXR_DGD_c_516 | 8% | 37% | 0.309 | 0.823 | 1.24 | 1.25 | 6 | 7 | 0 | 0 | 80% | 0.803 |
4IXR_DGD_C_518 | 8% | 36% | 0.337 | 0.823 | 1.22 | 1.28 | 10 | 7 | 0 | 0 | 94% | 0.9394 |
4IXR_DGD_B_621 | 7% | 41% | 0.378 | 0.85 | 1.22 | 1.1 | 8 | 5 | 0 | 0 | 88% | 0.8788 |
4IXR_DGD_c_518 | 6% | 34% | 0.331 | 0.767 | 1.11 | 1.47 | 6 | 13 | 0 | 0 | 100% | 1 |
4IXR_DGD_b_623 | 6% | 40% | 0.357 | 0.803 | 1.2 | 1.14 | 7 | 5 | 0 | 0 | 88% | 0.8788 |
4IXR_DGD_b_602 | 3% | 34% | 0.413 | 0.8 | 1.23 | 1.37 | 6 | 8 | 0 | 0 | 79% | 0.7879 |
4IXR_DGD_a_413 | 3% | 32% | 0.376 | 0.75 | 1.19 | 1.52 | 7 | 12 | 0 | 0 | 85% | 0.8485 |
4IXR_DGD_A_411 | 2% | 29% | 0.378 | 0.716 | 1.23 | 1.58 | 7 | 12 | 0 | 0 | 85% | 0.8485 |
4IXR_DGD_C_519 | 1% | 35% | 0.435 | 0.661 | 1.12 | 1.43 | 7 | 10 | 0 | 0 | 100% | 1 |
4IXR_DGD_B_627 | 1% | 33% | 0.502 | 0.715 | 1.22 | 1.43 | 6 | 9 | 0 | 0 | 79% | 0.7879 |
4IXR_DGD_d_409 | 0% | 35% | 0.614 | 0.598 | 1.14 | 1.42 | 5 | 12 | 0 | 0 | 95% | 0.9545 |
4IXR_DGD_D_409 | 0% | 35% | 0.739 | 0.562 | 1.14 | 1.41 | 6 | 9 | 0 | 0 | 95% | 0.9545 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
8IRC_DGD_C_517 | 85% | 47% | 0.096 | 0.973 | 0.83 | 1.2 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5ZZN_DGD_c_517 | 85% | 45% | 0.09 | 0.966 | 1.05 | 1.06 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
7RF1_DGD_c_519 | 85% | 34% | 0.093 | 0.968 | 1.16 | 1.45 | 6 | 11 | 0 | 0 | 94% | 0.9394 |