UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4DE7 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4DE7_UDP_A_401 | 1% | 32% | 0.499 | 0.752 | 0.8 | 2 | - | 6 | 0 | 0 | 64% | 0.3776 |
| 5JUC_UDP_A_401 | 81% | 75% | 0.103 | 0.956 | 0.46 | 0.49 | - | 1 | 0 | 0 | 100% | 1 |
| 5JT0_UDP_A_402 | 76% | 71% | 0.118 | 0.955 | 0.5 | 0.58 | - | - | 1 | 0 | 100% | 0.92 |
| 4DEC_UDP_A_401 | 75% | 33% | 0.098 | 0.932 | 1.03 | 1.7 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3E25_UDP_A_339 | 39% | 6% | 0.222 | 0.928 | 3.32 | 2.06 | 8 | 12 | 6 | 0 | 100% | 0.66 |
| 5JUD_UDP_A_401 | 5% | 6% | 0.393 | 0.794 | 3.9 | 1.49 | 9 | 4 | 1 | 0 | 100% | 0.48 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 20% | 0.046 | 0.991 | 2.39 | 1.19 | 4 | 3 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
