Ligand validation:3PDB

PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

PMP is a Ligand Of Interest in 3PDB designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3PDB_PMP_B_432	60%	50%	0.178	0.965	0.93	1.02	1	2	2	0	100%	1
3PDB_PMP_D_432	53%	50%	0.201	0.964	0.93	1	1	2	4	0	100%	1
3PD6_PMP_A_1	78%	24%	0.134	0.978	1.1	2.15	2	9	8	0	100%	1
2QB3_PMP_A_700	99%	26%	0.05	0.985	2.08	1.08	4	1	0	0	100%	0.4
8TN3_PMP_B_501	99%	52%	0.058	0.99	0.87	0.99	-	1	0	0	100%	1
6HBV_PMP_A_502	99%	18%	0.061	0.992	2.55	1.19	3	2	0	0	100%	0.5
2QBT_PMP_A_700	99%	49%	0.062	0.99	0.88	1.09	1	1	0	0	100%	0.75
6Q8E_PMP_A_401	98%	49%	0.058	0.984	0.86	1.12	-	1	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.