Ligand validation:3GMD

NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

NDP is a Ligand Of Interest in 3GMD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3GMD_NDP_C_300	89%	31%	0.097	0.978	1.63	1.24	10	4	0	0	100%	1
3GMD_NDP_E_300	88%	31%	0.103	0.978	1.61	1.24	7	3	4	0	100%	1
3GMD_NDP_D_300	84%	33%	0.109	0.973	1.46	1.32	7	6	3	0	100%	1
3GMD_NDP_F_300	84%	31%	0.111	0.975	1.63	1.25	9	4	3	0	100%	1
3GMD_NDP_B_300	81%	30%	0.107	0.96	1.59	1.31	9	4	2	0	100%	1
3GMD_NDP_A_300	80%	33%	0.115	0.965	1.61	1.17	8	5	2	0	100%	1
3GMD_NDP_H_300	78%	31%	0.114	0.956	1.64	1.24	8	3	2	0	100%	1
3GMD_NDP_G_300	73%	31%	0.124	0.951	1.61	1.26	7	4	4	0	100%	1
1Y5R_NDP_A_1	83%	30%	0.119	0.977	1.72	1.23	9	4	2	0	100%	1
4NMH_NDP_A_302	69%	34%	0.155	0.972	1.55	1.18	4	2	0	0	100%	1
4K26_NDP_A_304	51%	58%	0.144	0.898	0.58	1.02	-	3	6	0	100%	1
1Y5M_NDP_B_2	28%	25%	0.22	0.875	1.77	1.44	8	7	6	0	100%	1
1US0_NDP_A_318	100%	46%	0.027	0.998	1.21	0.91	3	-	4	0	100%	1
2I16_NDP_A_319	100%	46%	0.028	0.998	1.2	0.9	3	1	0	0	100%	1
2I17_NDP_A_319	100%	46%	0.029	0.998	1.22	0.89	3	-	0	0	100%	1
2PF8_NDP_A_318	100%	46%	0.031	0.998	1.17	0.93	3	-	4	0	100%	1
2PFH_NDP_A_318	100%	29%	0.03	0.998	1.79	1.2	8	7	4	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.