GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2HDN designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2HDN_GDP_L_6999 | 83% | 37% | 0.12 | 0.978 | 1.07 | 1.46 | 2 | 7 | 0 | 0 | 100% | 1 |
| 2HDN_GDP_J_5999 | 83% | 37% | 0.126 | 0.984 | 1.22 | 1.34 | 4 | 5 | 0 | 0 | 100% | 1 |
| 2HDN_GDP_H_4999 | 76% | 38% | 0.137 | 0.973 | 1.12 | 1.38 | 2 | 6 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_F_3999 | 71% | 40% | 0.139 | 0.961 | 0.99 | 1.41 | 2 | 7 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_B_1999 | 68% | 38% | 0.151 | 0.965 | 1.15 | 1.33 | 4 | 7 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_D_2999 | 68% | 37% | 0.162 | 0.974 | 1.11 | 1.42 | 2 | 7 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 19% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2PHN_GDP_A_2696 | 100% | 45% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
