7K1Q
Solution structure of lantibiotic from Paenibacillus sp.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
2 | 2D 1H-13C HSQC | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
3 | 2D 1H-1H COSY | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
4 | 2D 1H-1H NOESY | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
5 | 2D 1H-1H NOESY | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
6 | 2D 1H-1H TOCSY | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
7 | 2D 1H-1H TOCSY | 5.7 mM CMB001 | DMSO | 0 M | 0 | 1 bar | 298 | Bruker AVANCE 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | GROMACS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | GROMACS | Lindahl, Abraham, Hess, van der Spoel | |
2 | chemical shift assignment | CcpNmr Analysis | CCPN | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | peak picking | CcpNmr Analysis | CCPN | |
6 | structure calculation | GROMACS | Lindahl, Abraham, Hess, van der Spoel |