6TRP
Solution Structure of Docking Domain Complex of Pax NRPS: PaxC NDD - PaxB CDD
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC, 3D b-tr-HNCACB, 3D b-tr-HNCO, 3D HC(C)H-TOCSY | 370 uM [U-99% 13C; U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 600 |
2 | 2D 1H-15N HSQC, 3D (H)CCH-TOCSY | 370 uM [U-99% 13C; U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 700 |
3 | 2D 1H-15N HSQC, 3D HBHA(CO)NH, 3D HN(CA)CO, 3D H(CCO)NH | 1620 uM [U-99% 13C; U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 600 |
4 | 2D 1H-15N HSQC, 3D 1H-15N NOESY | 730 uM [U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 800 |
5 | 2D 1H-13C HSQC aliphatic, 3D 1H-13C NOESY aliphatic | 1620 uM [U-99% 13C; U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 600 |
6 | 2D 1H-13C HSQC aromatic, 3D 1H-13C NOESY aromatic | 1620 uM [U-99% 13C; U-99% 15N] PaxC NDD 12.5xGS Y-PaxB CDD | 90% H2O/10% D2O | 100 mM | 6.5 | AMBIENT bar | 293 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 600 |
4 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 3.97 | Guentert, Peter |
2 | chemical shift assignment | CARA | 1.8.4.2 | Keller, Rochus and Wuethrich, Kurt |
3 | collection | TopSpin | 3.5 | Bruker Biospin |
4 | data analysis | CcpNmr Analysis | 2.4.2 | CCPN |
5 | peak picking | UNIO | 10 | Herrmann, Thorsten, Guentert, Peter and Wuethrich, Kurt |
6 | structure calculation | CYANA | Guentert, Peter, Mumenthaler, Christian and Wuethrich, Kurt |