X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293100 mM sodium acetate, 100 mM Bis-Tris propane pH 7.5, 10 % PEG 3350
Crystal Properties
Matthews coefficientSolvent content
3.8367.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 175.842α = 90
b = 186.88β = 90
c = 242.279γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9762DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4449.751000.99812.27.4147443
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.442.481000.5511.67.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3RCN2.4449.8139765765499.950.211940.210680.23493RANDOM58.876
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.741.36-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.805
r_dihedral_angle_4_deg16.404
r_dihedral_angle_3_deg16.005
r_dihedral_angle_1_deg6.963
r_long_range_B_refined2.03
r_long_range_B_other2.027
r_angle_refined_deg1.279
r_angle_other_deg1.079
r_mcangle_it0.995
r_mcangle_other0.995
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.805
r_dihedral_angle_4_deg16.404
r_dihedral_angle_3_deg16.005
r_dihedral_angle_1_deg6.963
r_long_range_B_refined2.03
r_long_range_B_other2.027
r_angle_refined_deg1.279
r_angle_other_deg1.079
r_mcangle_it0.995
r_mcangle_other0.995
r_scangle_other0.971
r_mcbond_it0.562
r_mcbond_other0.562
r_scbond_it0.547
r_scbond_other0.547
r_chiral_restr0.043
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17880
Nucleic Acid Atoms
Solvent Atoms141
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MrBUMPphasing
Cootmodel building
PARROTphasing
BUCCANEERmodel building