X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2M Calcium chloride, 20% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.0138.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.327α = 66.48
b = 66.15β = 78.75
c = 78.629γ = 89.47
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0000ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13097.50.1520.180.0953.93.434585
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1893.40.5330.6370.3430.8621.863.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1129.8632118159496.740.267580.265290.31292RANDOM32.236
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.060.020.030.09-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.563
r_dihedral_angle_4_deg21.178
r_dihedral_angle_3_deg16.741
r_dihedral_angle_1_deg5.187
r_long_range_B_refined4.882
r_long_range_B_other4.852
r_scangle_other3.035
r_mcangle_it2.762
r_mcangle_other2.761
r_scbond_it1.937
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.563
r_dihedral_angle_4_deg21.178
r_dihedral_angle_3_deg16.741
r_dihedral_angle_1_deg5.187
r_long_range_B_refined4.882
r_long_range_B_other4.852
r_scangle_other3.035
r_mcangle_it2.762
r_mcangle_other2.761
r_scbond_it1.937
r_scbond_other1.928
r_mcbond_it1.797
r_mcbond_other1.786
r_angle_refined_deg1.481
r_angle_other_deg1.43
r_chiral_restr0.079
r_bond_refined_d0.01
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.007
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5328
Nucleic Acid Atoms
Solvent Atoms193
Heterogen Atoms254

Software

Software
Software NamePurpose
REFMACrefinement
BOSdata collection
DENZOdata reduction
HKL-2000data reduction
SCALEPACKdata scaling
HKL-2000data scaling
Cootmodel building
PHASERphasing