6OSW

An order-to-disorder structural switch activates the FoxM1 transcription factor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1TROSY-HNCO270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
2TROSY-HN(CA)CO270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
3TROSY-HNCA270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
4TROSY-HN(CO)CA270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
5TROSY-HNCB270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
13TROSY-HN(COCA)CB270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
12HMQC270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
11methyl-HSQC270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
10NOESY HN-NHN270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
9NOESY N-NHN270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
8NOESY HNHAro-CMHM270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
7NOESY CM-NHN270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
14NOESY HM-CMHM270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
15NOESY CM-CMHM270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
6isotopomer-selective TOCSY270 uM [U-13C; U-15N; U-2H] FoxM1 NRD, 270 uM [U-13C; U-15N; U-2H] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
16TROSY-HSQC270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Bruker AVANCE III HD 800
17Dnh (NH)270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Varian INOVA600 600
18DNC (NCO)270 uM [U-13C; U-15N] FoxM1 NRD, 270 uM [U-13C] FoxM1 TAD, 20 mM sodium phosphate, 100 mM potassium chloride95% H2O/5% D2O100 mM6.31 atm298Varian INOVA600 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD800
2VarianINOVA600600
NMR Refinement
MethodDetailsSoftware
naThe authors state that refinement was performed using the RASREC-Rosetta protocol. The ensemble structures were selected based on rosetta energies, minimum number of NOE violations and good fit to RDC measurements. The best representative conformer (model 1) was selected based upon rosetta energies.CS-ROSETTA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCS-ROSETTAShen, Vernon, Baker and Bax
2structure calculationCS-ROSETTAShen, Vernon, Baker and Bax
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard
5collectionTopSpinBruker Biospin
6data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax