6E86

Solution structure of ZZZ3 ZZ domain in complex with histone H3K4ac peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY 13C/15N filtered2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 4 nM H3K4ac, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
23D 1H-13C NOESY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 4 nM H3K4ac, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
33D 1H-15N NOESY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 4 nM H3K4ac, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
43D filtered 1H-13C NOESY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 4 nM H3K4ac, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA900
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRVarian
5processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentAnalysisCCPN
3structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
4refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman