6E83

Solution structure of ZZZ3 ZZ domain in complex with histone H3 tail


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
103D HNCA4 mM [U-13C; U-15N] ZZ domain of ZZZ3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
113D CBCA(CO)NH4 mM [U-13C; U-15N] ZZ domain of ZZZ3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
123D HBHA(CO)NH4 mM [U-13C; U-15N] ZZ domain of ZZZ3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
133D HCCH-TOCSY4 mM [U-13C; U-15N] ZZ domain of ZZZ3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
143D HNCACB4 mM [U-13C; U-15N] ZZ domain of ZZZ3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
13D CBCA(CO)NH2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
63D HBHA(CO)NH2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
83D HCCH-TOCSY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
92D 1H-1H TOCSY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 600
23D 1H-13C NOESY aliphatic2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
73D 1H-15N NOESY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
33D filtered 1H-13C NOESY aliphatic2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
43D filtered 1H-15N NOESY2 mM [U-13C; U-15N] ZZ domain of ZZZ3, 10 mM Histone H3, 100 mM sodium chloride, 20 mM TRIS, 7 % [U-99% 2H] D2O90% H2O/10% D2O0.1 M71 atm298Varian INOVA 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA900
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingAMBER
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRVarian
2processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentAnalysisCCPN
4structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
5refinementAMBERD.A. Case, I.Y. Ben-Shalom, S.R. Brozell, D.S. Cerutti, T.E. Cheatham, III, V.W.D. Cruzeiro, T.A. Darden, R.E. Duke, D. Ghoreishi, M.K. Gilson, H. Gohlke, A.W. Goetz, D. Greene, R Harris, N. Homeyer, S. Izadi, A. Kovalenko, T. Kurtzman, T.S. Lee, S. LeGrand, P. Li, C. Lin, J. Liu, T. Luchko, R. Luo, D.J. Mermelstein, K.M. Merz, Y. Miao, G. Monard, C. Nguyen, H. Nguyen, I. Omelyan, A. Onufriev, F. Pan, R. Qi, D.R. Roe, A. Roitberg, C. Sagui, S. Schott-Verdugo, J. Shen, C.L. Simmerling, J. Smith, R. Salomon-Ferrer, J. Swails, R.C. Walker, J. Wang, H. Wei, R.M. Wolf, X. Wu, L. Xiao, D.M. York and P.A. Kollman