CS-rosetta determined structures of the C-terminal domain of AlgF from P. aeruginosa
SOLUTION NMR - SOLUTION SCATTERING
NMR Experiment |
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
2 | 3D HNCO | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
3 | 3D HNCA | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
4 | 3D HNCACB | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
5 | 3D CBCA(CO)NH | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
10 | 3D C(CO)NH | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
9 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
8 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
7 | 3D 1H-13C NOESY aliphatic | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
6 | 3D 1H-13C NOESY aromatic | 1 mM [U-13C; U-15N] AlgF, 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
NMR Spectrometer Information |
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Spectrometer | Manufacturer | Model | Field Strength |
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1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement |
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Method | Details | Software |
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molecular dynamics | | CS-ROSETTA |
NMR Ensemble Information |
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Conformer Selection Criteria | structures with the lowest energy |
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Conformers Calculated Total Number | 3000 |
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Conformers Submitted Total Number | 10 |
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Representative Model | 1 (lowest energy) |
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Computation: NMR Software |
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# | Classification | Version | Software Name | Author |
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1 | chemical shift assignment | NMRView | | Johnson, One Moon Scientific |
2 | chemical shift assignment | Analysis | | CCPN |
3 | processing | NMRPipe | | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | data analysis | NMRDraw | | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
5 | refinement | CS-ROSETTA | | Shen, Vernon, Baker and Bax |
7 | peak picking | NMRView | | Johnson, One Moon Scientific |
8 | peak picking | Analysis | | CCPN |
9 | structure calculation | CS-ROSETTA | | Shen, Vernon, Baker and Bax |