5ZUX

Solution Structure of the DNA complex of the C-terminal Domain of Rok


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq190% H2O/10% D2O50 mM NaCl mM6.0ambient bar298Bruker AVANCE 950
23D 1H-15N NOESY0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq190% H2O/10% D2O50 mM NaCl mM6.0ambient bar298Bruker AVANCE 950
33D F1-15N/13C filtered, F2-13C edited NOESY0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq190% H2O/10% D2O50 mM NaCl mM6.0ambient bar308Bruker AVANCE 950
42D F1, F2-15N/13C-filtered 1H-1H NOESY0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq190% H2O/10% D2O50 mM NaCl mM6.0ambient bar308Bruker AVANCE 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE950
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentSANEDuggan, Legge, Dyson & Wright
4peak pickingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax