5ZUX
Solution Structure of the DNA complex of the C-terminal Domain of Rok
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 | 90% H2O/10% D2O | 50 mM NaCl mM | 6.0 | ambient bar | 298 | Bruker AVANCE 950 |
2 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 | 90% H2O/10% D2O | 50 mM NaCl mM | 6.0 | ambient bar | 298 | Bruker AVANCE 950 |
3 | 3D F1-15N/13C filtered, F2-13C edited NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 | 90% H2O/10% D2O | 50 mM NaCl mM | 6.0 | ambient bar | 308 | Bruker AVANCE 950 |
4 | 2D F1, F2-15N/13C-filtered 1H-1H NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Rok, 2.5 mM 1H_12C_14N Seq1 | 90% H2O/10% D2O | 50 mM NaCl mM | 6.0 | ambient bar | 308 | Bruker AVANCE 950 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 950 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | SANE | Duggan, Legge, Dyson & Wright | |
4 | peak picking | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |