X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2770.2M Ammonium sulphate, 30% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.5756.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.462α = 90
b = 79.611β = 122.65
c = 88.479γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2015-11-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.97ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7874.598.917.23.858363
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.811000.4710.4710.550.280.842.33.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5XGG1.7874.555453289298.290.184850.182530.22804RANDOM26.693
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.01-0.950.211.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.35
r_dihedral_angle_3_deg13.748
r_long_range_B_refined8.046
r_long_range_B_other8.045
r_scangle_other5.768
r_dihedral_angle_1_deg5.649
r_scbond_it3.986
r_scbond_other3.985
r_mcangle_it3.181
r_mcangle_other3.181
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.35
r_dihedral_angle_3_deg13.748
r_long_range_B_refined8.046
r_long_range_B_other8.045
r_scangle_other5.768
r_dihedral_angle_1_deg5.649
r_scbond_it3.986
r_scbond_other3.985
r_mcangle_it3.181
r_mcangle_other3.181
r_mcbond_it2.308
r_mcbond_other2.307
r_angle_refined_deg1.93
r_angle_other_deg1.027
r_chiral_restr0.119
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3777
Nucleic Acid Atoms
Solvent Atoms586
Heterogen Atoms149

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERmodel building